Product Name

  • Name

    6-Chloropurine

  • EINECS 201-745-6
  • CAS No. 87-42-3
  • Article Data29
  • CAS DataBase
  • Density 1.653 g/cm3
  • Solubility 5 g/L in water
  • Melting Point >300 °C (dec.)(lit.)
  • Formula C5H3ClN4
  • Boiling Point 449.6 °C at 760 mmHg
  • Molecular Weight 154.559
  • Flash Point 258.2 °C
  • Transport Information
  • Appearance light yellow crystalline powder
  • Safety 26-36-36/37/39
  • Risk Codes 22-36/37/38-20/21/22
  • Molecular Structure Molecular Structure of 87-42-3 (6-Chloropurine)
  • Hazard Symbols HarmfulXn,IrritantXi
  • Synonyms 1H-Purine, 6-chloro- (9CI);6-Chloro-1H-purine;1H-Purine, 6-chloro-;SK 6048;Purine, 6-chloro-;X 47;6-chloro-5H-purine;6-CP;6-Chloro purine 98%;NSC-744;PVC Pigment Dispersion Chips;Aquilaria sinensis (Lour.) Gilg 2-(2-Phenylethyl) chromone derivatives;
  • PSA 54.46000
  • LogP 1.00630

Synthetic route

4,5,6-trichloropyrimidine
1780-27-4

4,5,6-trichloropyrimidine

formimidamide hydrochloride

formimidamide hydrochloride

6-chloropurine
87-42-3

6-chloropurine

Conditions
ConditionsYield
In ethanol at 15 - 25℃; for 12h;97.1%
6-[2-(ethoxycarbonyl)methyl]-9-(tetrahydropyran-2-yl)-9H-purine
948037-39-6

6-[2-(ethoxycarbonyl)methyl]-9-(tetrahydropyran-2-yl)-9H-purine

6-chloropurine
87-42-3

6-chloropurine

Conditions
ConditionsYield
With Dowex 50 In ethanol at 70℃; for 3h;93%
hypoxanthine
68-94-0

hypoxanthine

6-chloropurine
87-42-3

6-chloropurine

Conditions
ConditionsYield
With N,N-dimethyl-aniline; trichlorophosphate under 760.051 Torr; Heating;92%
With trichlorophosphate In N,N-dimethyl acetamide at 120℃; for 2h;86%
With trichlorophosphate In N,N-dimethyl-formamide at 80℃; for 8h;76.7%
With trichlorophosphate In ethylbenzene; acetonitrile at 65℃; for 6h;53%
Allopurinol
68-94-0

Allopurinol

6-chloropurine
87-42-3

6-chloropurine

Conditions
ConditionsYield
With dmap; thionyl chloride; bis(trichloromethyl) carbonate Catalytic behavior; Reagent/catalyst; Reflux; Green chemistry;90%
With trichlorophosphate In dichloromethane; N,N-dimethyl-formamide at 40℃; for 3h;71.5%
With 2,3-Dimethylaniline; trichlorophosphate for 0.5h; Heating;47%
9-(3'-azido-2'-O-triflyl-5'-O-benzoyl-3'-deoxy-β-D-ribofuranosyl)-6-chloro-9H-purine
917239-31-7

9-(3'-azido-2'-O-triflyl-5'-O-benzoyl-3'-deoxy-β-D-ribofuranosyl)-6-chloro-9H-purine

A

benzoic acid 3-azido-furan-2-ylmethyl ester

benzoic acid 3-azido-furan-2-ylmethyl ester

B

6-chloropurine
87-42-3

6-chloropurine

Conditions
ConditionsYield
With tetrabutyl ammonium fluoride In tetrahydrofuran at 20℃; for 20h;A 84%
B 82%
C20H30ClFN4O4Si
1062217-28-0

C20H30ClFN4O4Si

A

C14H16ClFN4O4

C14H16ClFN4O4

B

C11H12ClFN4O4
1062217-43-9

C11H12ClFN4O4

C

6-chloropurine
87-42-3

6-chloropurine

Conditions
ConditionsYield
With trifluoroacetic acid In 1,4-dioxane for 7h;A n/a
B 41%
C n/a
C20H30ClFN4O4Si
1062217-31-5

C20H30ClFN4O4Si

A

C11H12ClFN4O4
1062217-44-0

C11H12ClFN4O4

B

C14H16ClFN4O4
1062217-36-0

C14H16ClFN4O4

C

6-chloropurine
87-42-3

6-chloropurine

Conditions
ConditionsYield
With trifluoroacetic acid In 1,4-dioxane for 7h;A 37%
B n/a
C n/a
9-(1-Ethoxyethyl-1)-6-chloropurine
33441-77-9

9-(1-Ethoxyethyl-1)-6-chloropurine

6-chloropurine
87-42-3

6-chloropurine

Conditions
ConditionsYield
In hydrogenchloride; water at 40.1℃; Kinetics; Mechanism;
6-chloropurine-2'-deoxyriboside
4594-45-0

6-chloropurine-2'-deoxyriboside

6-chloropurine
87-42-3

6-chloropurine

Conditions
ConditionsYield
In hydrogenchloride; water at 50.1℃; Kinetics; Mechanism;
9-(3'-azido-5'-O-benzoyl-3'-deoxy-β-D-ribofuranosyl)-6-chloro-9H-purine
917239-30-6

9-(3'-azido-5'-O-benzoyl-3'-deoxy-β-D-ribofuranosyl)-6-chloro-9H-purine

6-chloropurine
87-42-3

6-chloropurine

Conditions
ConditionsYield
Multi-step reaction with 2 steps
1: 84 percent / pyridine / CH2Cl2 / -40 °C
2: 82 percent / TBAF / tetrahydrofuran / 20 h / 20 °C
View Scheme
xanthine
69-89-6

xanthine

6-chloropurine
87-42-3

6-chloropurine

Conditions
ConditionsYield
Multi-step reaction with 2 steps
1: 70 percent / formamide / 0.5 h / 200 °C
2: 53 percent / POCl3 / ethylbenzene; acetonitrile / 6 h / 65 °C
View Scheme
Acetic acid (3S,4R)-4-acetoxy-2-chloro-tetrahydro-pyran-3-yl ester
87990-00-9

Acetic acid (3S,4R)-4-acetoxy-2-chloro-tetrahydro-pyran-3-yl ester

6-chloropurine
87-42-3

6-chloropurine

Acetic acid (2R,3R,4S)-4-acetoxy-2-(6-chloro-purin-9-yl)-tetrahydro-pyran-3-yl ester
87990-01-0

Acetic acid (2R,3R,4S)-4-acetoxy-2-(6-chloro-purin-9-yl)-tetrahydro-pyran-3-yl ester

Conditions
ConditionsYield
With 3 A molecular sieve; Quecksilber(I)-cyanid In nitromethane for 3h; Heating;100%
6-chloropurine
87-42-3

6-chloropurine

1,2,3,5-tetra-O-benzoyl-2-C-methyl-β-D-ribofuranose
15397-15-6

1,2,3,5-tetra-O-benzoyl-2-C-methyl-β-D-ribofuranose

(2R,3R,4R,5R)-5-((benzoyloxy)methyl)-2-(6-chloro-9H-purin-9-yl)-3-methyltetrahydrofuran-3,4-diyl dibenzoate
205171-04-6

(2R,3R,4R,5R)-5-((benzoyloxy)methyl)-2-(6-chloro-9H-purin-9-yl)-3-methyltetrahydrofuran-3,4-diyl dibenzoate

Conditions
ConditionsYield
100%
With trimethylsilyl trifluoromethanesulfonate; 1,8-diazabicyclo[5.4.0]undec-7-ene In acetonitrile at 60℃; for 4h;83%
With benzenesulfonamide; trimethylsilyl trifluoromethanesulfonate In acetonitrile at 60℃; for 3h;
With trimethylsilyl trifluoromethanesulfonate; 1,8-diazabicyclo[5.4.0]undec-7-ene In tetrahydrofuran at 20℃; for 18h;
6-chloropurine
87-42-3

6-chloropurine

Cyclopropylamine
765-30-0

Cyclopropylamine

6-(cyclopropylamino)-9H-purine
117761-02-1

6-(cyclopropylamino)-9H-purine

Conditions
ConditionsYield
In ethanol for 6h; Heating;100%
In isopropyl alcohol at 120℃; for 2h;90%
In methanol81.4%
In ethanol Heating;
In ethanol for 16h; Heating;
morpholine
110-91-8

morpholine

6-chloropurine
87-42-3

6-chloropurine

6-morpholinopurine
2846-96-0

6-morpholinopurine

Conditions
ConditionsYield
With indium(III) chloride In acetonitrile at 120℃; for 0.5h; Microwave irradiation; regioselective reaction;100%
at 80℃;96%
at 80℃; for 0.0166667h; microwave irradiation;94%
4-morpholino-4-yl-phenylamine
2524-67-6

4-morpholino-4-yl-phenylamine

6-chloropurine
87-42-3

6-chloropurine

6-(4-morpholinophenylamino)-9H-purin-3-ium chloride

6-(4-morpholinophenylamino)-9H-purin-3-ium chloride

Conditions
ConditionsYield
With indium(III) chloride In acetonitrile at 120℃; for 1h; Microwave irradiation; regioselective reaction;100%
2-(hydroxy(phenyl)methyl)-4-methylphenol
55075-31-5

2-(hydroxy(phenyl)methyl)-4-methylphenol

6-chloropurine
87-42-3

6-chloropurine

C19H15ClN4O

C19H15ClN4O

Conditions
ConditionsYield
With toluene-4-sulfonic acid In dichloromethane at 20℃; for 6h;100%
3,4-dihydro-2H-pyran
110-87-2

3,4-dihydro-2H-pyran

6-chloropurine
87-42-3

6-chloropurine

6-chloro-9-(tetrahydro-2H-pyran-2-yl)-9H-purine
7306-68-5

6-chloro-9-(tetrahydro-2H-pyran-2-yl)-9H-purine

Conditions
ConditionsYield
With toluene-4-sulfonic acid In ethyl acetate at 90℃; for 1h;99%
With toluene-4-sulfonic acid In ethyl acetate at 90℃; for 1h;99.3%
With toluene-4-sulfonic acid In ethyl acetate at 90℃; for 0.1h;97%
phenylacetylene
536-74-3

phenylacetylene

6-chloropurine
87-42-3

6-chloropurine

6-(phenylethynyl)-9H-purine
85110-23-2

6-(phenylethynyl)-9H-purine

Conditions
ConditionsYield
With sodium tetrachloropalladate(II); dicyclohexyl {2-sulfo-9-[3-(4-sulfophenyl)propyl]-9H-fluoren-9-yl}phosphonium hydrogen sulfate; potassium carbonate In water at 95℃; for 16h; Sonogashira coupling; Inert atmosphere;99%
With bis-triphenylphosphine-palladium(II) chloride; copper(l) iodide; triethylamine In dimethyl sulfoxide at 90℃; for 1.5h;65%
sodium thiophenolate
930-69-8

sodium thiophenolate

6-chloropurine
87-42-3

6-chloropurine

6-(phenylsulfanyl)purine
5450-35-1

6-(phenylsulfanyl)purine

Conditions
ConditionsYield
In N,N-dimethyl-formamide at 80℃; for 0.0166667h; microwave irradiation;99%
sodium ethanolate
141-52-6

sodium ethanolate

6-chloropurine
87-42-3

6-chloropurine

6-ethoxy-9H-purine
17861-06-2

6-ethoxy-9H-purine

Conditions
ConditionsYield
In 1-methyl-pyrrolidin-2-one at 100℃; for 0.0333333h; microwave irradiation;99%
6-chloropurine
87-42-3

6-chloropurine

sodium thiomethoxide
5188-07-8

sodium thiomethoxide

6-methylthiopurine
50-66-8

6-methylthiopurine

Conditions
ConditionsYield
In N,N-dimethyl-formamide at 80℃; for 0.0166667h; microwave irradiation;99%
Benzeneselenol
645-96-5

Benzeneselenol

6-chloropurine
87-42-3

6-chloropurine

6-(phenylselanyl)-9H-purine

6-(phenylselanyl)-9H-purine

Conditions
ConditionsYield
With barium dihydroxide In water at 90℃; for 0.0333333h; microwave irradiation;99%
sodium methylate
124-41-4

sodium methylate

6-chloropurine
87-42-3

6-chloropurine

6-methoxypurine
1074-89-1

6-methoxypurine

Conditions
ConditionsYield
In N,N-dimethyl-formamide at 90℃; for 0.0166667h; microwave irradiation;99%
In methanol for 18h; Reflux;72%
In methanol for 12h; Reflux; Inert atmosphere;43%
1-(hydroxymethyl)-4-propylpyrrolidin-2-one
854141-63-2

1-(hydroxymethyl)-4-propylpyrrolidin-2-one

6-chloropurine
87-42-3

6-chloropurine

1-[(6-chloro-9H-purin-9-yl)methyl]-4-propylpyrrolidin-2-one
916257-23-3

1-[(6-chloro-9H-purin-9-yl)methyl]-4-propylpyrrolidin-2-one

Conditions
ConditionsYield
N,N-diethylcarbamyl chloride In acetonitrile at 100℃; for 5h; Microwave;99%
diphenyliodonium chloride
1483-72-3

diphenyliodonium chloride

6-chloropurine
87-42-3

6-chloropurine

6-Chloro-9-phenyl-9H-purine
5470-24-6

6-Chloro-9-phenyl-9H-purine

Conditions
ConditionsYield
With potassium carbonate; copper(I) bromide In dichloromethane for 2.5h; Reflux; Inert atmosphere; regioselective reaction;99%
hexan-1-amine
111-26-2

hexan-1-amine

6-chloropurine
87-42-3

6-chloropurine

N6-n-hexyladenine
14333-96-1

N6-n-hexyladenine

Conditions
ConditionsYield
With indium(III) chloride In acetonitrile at 120℃; for 1.5h; Microwave irradiation; regioselective reaction;99%
2-[hydroxy(4-methylphenyl)methyl]phenol

2-[hydroxy(4-methylphenyl)methyl]phenol

6-chloropurine
87-42-3

6-chloropurine

C19H15ClN4O

C19H15ClN4O

Conditions
ConditionsYield
With toluene-4-sulfonic acid In dichloromethane at 20℃; for 5h;99%
para-thiocresol
106-45-6

para-thiocresol

6-chloropurine
87-42-3

6-chloropurine

6-(p-tolylthio)purine

6-(p-tolylthio)purine

Conditions
ConditionsYield
With potassium tert-butylate In isopropyl alcohol at 50℃;98%
methyl N-trityl-L-serinate
13515-76-9, 116457-91-1, 4465-44-5

methyl N-trityl-L-serinate

6-chloropurine
87-42-3

6-chloropurine

methyl 3-(6-chloro-9H-purin-9-yl)-2-(tritylamino)propanoate
1228040-59-2

methyl 3-(6-chloro-9H-purin-9-yl)-2-(tritylamino)propanoate

Conditions
ConditionsYield
With di-isopropyl azodicarboxylate; triphenylphosphine In 5,5-dimethyl-1,3-cyclohexadiene at 25℃; for 1h; Mitsunobu reaction;98%
2-(hydroxymethyl)-6-methyl-1,3,6,2-dioxazaborocane-4,8-dione

2-(hydroxymethyl)-6-methyl-1,3,6,2-dioxazaborocane-4,8-dione

6-chloropurine
87-42-3

6-chloropurine

C11H11BClN5O4

C11H11BClN5O4

Conditions
ConditionsYield
With di-isopropyl azodicarboxylate; triphenylphosphine In tetrahydrofuran at 23℃; for 0.5h; Mitsunobu Displacement;98%
4-carboxamidopiperidine
39546-32-2

4-carboxamidopiperidine

6-chloropurine
87-42-3

6-chloropurine

1-(9H-purin-6-yl)piperidine-4-carboxylic acid amide

1-(9H-purin-6-yl)piperidine-4-carboxylic acid amide

Conditions
ConditionsYield
With triethylamine In butan-1-ol at 100℃;97%
With triethylamine In butan-1-ol at 100℃; for 0.666667h;
trityl chloride
76-83-5

trityl chloride

6-chloropurine
87-42-3

6-chloropurine

6-chloro-9-trityl-9H-purine
1008361-76-9

6-chloro-9-trityl-9H-purine

Conditions
ConditionsYield
With triethylamine In dichloromethane at 20℃; for 2h; Inert atmosphere;97%
aniline
62-53-3

aniline

6-chloropurine
87-42-3

6-chloropurine

6-(phenylamino)-9H-purin-3-ium chloride

6-(phenylamino)-9H-purin-3-ium chloride

Conditions
ConditionsYield
With indium(III) chloride In acetonitrile at 120℃; for 0.5h; Microwave irradiation; regioselective reaction;97%
3-((trimethylsilyl)oxy)propan-1-amine hydrochloride

3-((trimethylsilyl)oxy)propan-1-amine hydrochloride

6-chloropurine
87-42-3

6-chloropurine

N6-(3-hydroxypropyl)adenine
15500-81-9

N6-(3-hydroxypropyl)adenine

Conditions
ConditionsYield
With potassium carbonate In tetrahydrofuran; N,N-dimethyl-formamide at 70℃; for 72h; Reagent/catalyst; Solvent; Temperature; Inert atmosphere;97%
4-hydroxy-3-methyl-trans-but-2-enylamine
1795-76-2, 26806-03-1, 35042-70-7

4-hydroxy-3-methyl-trans-but-2-enylamine

6-chloropurine
87-42-3

6-chloropurine

trans-zeatin
1637-39-4

trans-zeatin

Conditions
ConditionsYield
With triethylamine In ethanol for 5h; Reflux;96.8%
With triethylamine In butan-1-ol for 3h; Heating;80%
3-methyl-2-butenamide
4479-75-8

3-methyl-2-butenamide

6-chloropurine
87-42-3

6-chloropurine

3-methyl-but-2-enoic acid 7(9)H-purin-6-ylamide
21589-34-4

3-methyl-but-2-enoic acid 7(9)H-purin-6-ylamide

Conditions
ConditionsYield
With triethylamine In ethanol for 5h; Reflux;96.8%
furan-2-ylmethanamine
617-89-0

furan-2-ylmethanamine

6-chloropurine
87-42-3

6-chloropurine

kinetin
525-79-1

kinetin

Conditions
ConditionsYield
With triethylamine In ethanol for 5h; Reflux;96.7%
In ethanol Reflux; Inert atmosphere;88%
With triethylamine In butan-1-ol at 110℃; for 5h;76.4%
With triethylamine In butan-1-ol at 110℃;73.9%
With N-ethyl-N,N-diisopropylamine In butan-1-ol at 100℃; for 16h;
3,3-dimethylallylamine
13822-06-5, 108963-90-2

3,3-dimethylallylamine

6-chloropurine
87-42-3

6-chloropurine

N6-(2-isopentenyl)adenine
2365-40-4

N6-(2-isopentenyl)adenine

Conditions
ConditionsYield
With triethylamine In ethanol for 5h; Reflux;96.6%
Conditions
ConditionsYield
With ammonium hydroxide; triethylamine In ethanol for 5h; Reflux;96.3%
With potassium amide In ammonia at -33℃; for 20h; Yield given;
Multi-step reaction with 3 steps
1: potassium carbonate / N,N-dimethyl-formamide / 17 h / 20 °C / Inert atmosphere
2: ammonia / tert-butyl alcohol / 21 h / 120 °C
3: potassium carbonate / 7 h / 200 °C / Microwave irradiation
View Scheme

6-Chloropurine Specification

The IUPAC name of 6-Chloropurine is 6-chloro-7H-purine. With the CAS registry number 87-42-3, it is also named as 1H-Purine, 6-chloro- (9CI). The product's categories are Fine Chemical & Intermediates; Heterocyclic Compounds; Nucleotides and Nucleosides; Purines; Biochemistry; Nucleosides, Nucleotides & Related Reagents; Bases & Related Reagents; Nucleotides; Building Blocks; Halogenated Heterocycles; Heterocyclic Building Blocks; Biochemicals and Reagents; Nucleosides, Nucleotides, Oligonucleotides. It is light yellow crystalline powder which is soluble in water, ether and dimethyl formamide. Additioanlly, this chemical should be sealed in the container and stored at the temperature of 4 °C.

Physical properties about 6-Chloropurine are: (1)ACD/LogP: -0.061; (2)ACD/LogD (pH 5.5): -0.06; (3)ACD/LogD (pH 7.4): -0.06; (4)ACD/BCF (pH 5.5): 1.00; (5)ACD/BCF (pH 7.4): 1.00; (6)ACD/KOC (pH 5.5): 22.06; (7)ACD/KOC (pH 7.4): 22.06; (8)#H bond acceptors: 4; (9)Index of Refraction: 1.843 ; (10)Molar Refractivity: 37.302 cm3; (11)Molar Volume: 83.984 cm3; (12)Polarizability: 14.788 10-24cm3; (13)Surface Tension: 73.2460021972656 dyne/cm; (14)Density: 1.84 g/cm3; (15)Flash Point: 109.146 °C; (16) Enthalpy of Vaporization: 47.442 kJ/mol; (17)Boiling Point: 256.862 °C at 760 mmHg; (18)Vapour Pressure: 0.0240000002086163 mmHg at 25°C

Preparation of 6-Chloropurine: It can be obtained by 1,7(9)-dihydro-purin-6-one. This reaction needs reagent POCl3, dimethylaniline by heating. The reaction time is 0.5 hours. The yield is 47%. 

Preparation of 6-Chloropurine

Uses of 6-Chloropurine: It is used as intermediate of purine products. It also can react with 3-methyl-oxazolidine to get 8-methyl-7,8-dihydro-6H-[1,3,6]oxdiazocino[3,4,5-g,h]purine. This reaction needs solvent N,N-dimethyl-acetamide at temperature of 110 °C. The reaction time is 30 min. The yield is 60%.  

When you are using this chemical, please be cautious about it as the following:
It is not only harmful by inhalation, in contact with skin and if swallowed, but also irritating to eyes, respiratory system and skin. In case of contact with eyes, rinse immediately with plenty of water and seek medical advice. If you want to contact this product, you must wear suitable protective clothing, gloves and eye/face protection.

You can still convert the following datas into molecular structure:
(1)InChI=1S/C5H3ClN4/c6-4-3-5(9-1-7-3)10-2-8-4/h1-2H,(H,7,8,9,10);
(2)InChIKey=ZKBQDFAWXLTYKS-UHFFFAOYSA-N;
(3)Smilesc12c(ncnc1Cl)nc[nH]2

The toxicity data is as follows:

Organism Test Type Route Reported Dose (Normalized Dose) Effect Source
mouse LD10 unreported 230mg/kg (230mg/kg) BLOOD: CHANGES IN BONE MARROW NOT INCLUDED ABOVE Progress in Medical Chemistry. Vol. 7, Pg. 69, 1970.
mouse LD50 intraperitoneal 132mg/kg (132mg/kg)   National Cancer Institute Screening Program Data Summary, Developmental Therapeutics Program. Vol. JAN1986,
mouse LD50 oral 720mg/kg (720mg/kg)   National Cancer Institute Screening Program Data Summary, Developmental Therapeutics Program. Vol. JAN1986,
mouse LD50 subcutaneous 514mg/kg (514mg/kg)   National Cancer Institute Screening Program Data Summary, Developmental Therapeutics Program. Vol. JAN1986,
quail LD50 oral > 316mg/kg (316mg/kg)   Ecotoxicology and Environmental Safety. Vol. 6, Pg. 149, 1982.
rat LD50 intraperitoneal 400mg/kg (400mg/kg)   Advances in Teratology. Vol. 3, Pg. 181, 1968.

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